代表性论文：
1.WanwenZengetal,Compressingregulatorynetworkstovectorsforinterpretinggeneexpressionandgeneticvariants,NatureMachineIntelligence,2021,inpress
2.QiaoLiuetal,Simultaneousdeepgenerativemodelingandclusteringofsinglecellgenomicdata,NatureMachineIntelligence,2021,inpress
3.ShengquanChenetal,OpenAnnotate:awebservertoannotatethechromatinaccessibilityofgenomicregions,NucleicAcidsResearch,2021,inpress
4.ShengquanChenetal,DeepCAPE:adeepconvolutionalneuralnetworkfortheaccuratepredictionofenhancers,Genomics,Proteomics&Bioinformatics,2021,inpress
5.ShengquanChenetal,Areference-guidedapproachforepigeneticcharacterizationofsinglecells,NatureCommunications,2021,12:2177
6.QiaoLiuetal,Densityestimationusingdeepgenerativeneuralnetworks,ProcNatlAcadSciUSA,2021,118(15):e2101344118
7.WenranLietal,Amethodforscoringthecell-typespecificimpactsofnon-codingvariantsinpersonalgenomes,ProcNatlAcadSciUSA,2020,117(35):21364-21372
8.WanwenZengetal,SilencerDB:acomprehensivedatabaseofsilencers,NucleicAcidsResearch,2020,49(D1):D221-D228
9.WanwenZengetal,DC3:Deconvolutionandcoupledclusteringfrombulkandsinglecellgenomicsdata,NatureCommunications,2019,10:4613
10.WenranLietal,DeepTACT:predictinghigh-resolutionchromatincontactsviabootstrappingdeeplearning,NucleicAcidsResearch,2019,47(10):e60
11.ZehuaLiuetal,Reconstructingcellcyclepseudotime-seriesviasingle-celltranscriptomedata,NatureCommunications,2017,8:22
12.ZhanaDurenetal,Modelinggeneregulationfrompairedexpressionandchromatinaccessibilitydata,ProcNatlAcadSciUSA,2017,114(25):E4914-E4923
13.FengZengetal,PyroHMMsnp:aSNPcallerforIonTorrentand454sequencingdata,NucleicAcidsResearch,2013,41(13):e136
14.RuiJiangetal,Sequence-basedprioritizationofnonsynonymoussingle-nucleotidepolymorphismsforthestudyofdiseasemutations,AmericanJournalofHumanGenetics,2007,81(2):346-360
15.RuiJiangetal,Networkmotifidentificationinstochasticnetworks,ProcNatlAcadSciUSA,2006,103(25):9404-9409
发明专利：
1.HE染色器官病理图像分割方法、装置
2.细胞图像中细胞轮廓弯曲程度的衡量方法、系统及介质
3.高分辨率图像纹理特征提取方法及系统
4.掩模图像的分割方法及系统
5.基于图路径搜索和深度学习的细胞图像分割方法
6.图像要素提取方法及装置
7.一种基于专用语料库字向量的无监督中文分词方法
8.电子病历表型抽取、表型名称规范化方法及系统
9.中文电子病历命名实体抽取方法及系统
10.基于深度学习的医院分诊方法、系统、装置及介质
11.一种基于词向量的医疗分诊方法及系统
12.多类生物序列注释的整合方法
13.基因组单位点变异致病性的预测方法、系统及存储介质
软件著作权：
1.数字化组织病理影像浏览标注软件V1.0
2.数字化组织病理影像几何变换软件V1.0
3.基于深度学习的多系统萎缩综合征辅助诊断软件V1.0
4.数字化组织病理影像加噪模糊软件V1.0
5.数字化组织病理影像色彩调整软件V1.0
6.数字化组织病理影像分割软件V1.0
7.细胞分割预处理浏览软件V1.0
8.细胞形状特征提取软件V1.0
9.染色质开放性注释与可视化系统
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